CRISPRcleanR
Pre-processing of CRISPR-KO screening data and correction of gene independent responses to CRISPR-Cas9 targeting.
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Apps, Tools and Computable Manuscripts
CELLector
Patient-genomics-guided selection of cancer in vitro models allowing in-silico drug/target prescriptions.
coRe
Identification of core fitness genes from joint analyses of multiple genome-wide CRISPR-Cas9 screens.
MinTEs
Reduced gene templates for supervised analysis of scale-limited CRISPR-Cas9 fitness screens.
HT-29 Benchmark
Benchmarking pipeline and R package for evaluating CRISPR screens data quality.
Structural Bias Benchmark
Benchmark of state-of-the-art computational methods for correcting biases of established and unknown origin in CRISPR-Cas9 screening data.
CeSta
Integrative ensemble predictor of cetuximab sensitivity in colorectal cancer PDXs from their basal multi-omic characterisation.
CRISPR-VUS
Identification of dependency-associated mutations through integrated analysis of genome-wide CRISPR-Cas9 screens.
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